PTM Proteomics for Beginners: Hands-on Workshop

Event details Date: Thursday, September 10, 2026 Time: All day Location: Tata Hall - Kavli Auditorium (3rd floor) & 2301 Tata Hall - 9325 S Scholars Dr, La Jolla, CA 92093 Type: Lecture / Workshop Campus area: Revelle Audience: Staff and Faculty, Alumni, Students, Graduate and Professional, Visitors About this event The Goeddel Family Technology Sandbox and Thermo Fisher Scientific are co-hosting this free, hands-on workshop designed for graduate students, postdocs, researchers and faculty in academia and industry interested in proteomics, mass spectrometry and advanced data analysis. Join us on September 9-10 to learn about and gain practical experience with: The basics of proteomics, experimental planning and enrichment-based sample preparation of Post-Translational Modification (PTM) peptides by IMAC and PTMScan® methods; Mass spec-based PTM quantitative proteomics using the Orbitrap Eclipse MS, including data acquisition for data-independent acquisition (DIA) or data-dependent (DDA) analysis;Data analysis by Thermo Fisher Scientific Proteome Discoverer pipeline and understanding secondary data analysis approaches, including pathway analysis and proteomics data reporting; andQuantitative proteomics MS methods on the Oribitrap Eclipse.Workshop sessions will cover: Workshop introduction and overview of the Goeddel Family Technology Sandbox Overview of proteomics and experimental plan, including phosphopeptides and Ubiquitin Remnant Motif (K-e-GG) enrichment sample preparationMS-based PTM proteomics on the Oribitrap EclipsePeptide clean-upPeptide drying Sample submission for MS-data acquisition, overview different workflowsMS data analysis overview and Proteome Discoverer set upPTM mass spec data analysis by DIA or DDA approachesMS results reportingRegistration and Waitlist Registration for the full two-day workshop is now full, but don't worry! You may still be able to participate by: Registering for Day 2 (Data Analysis), which remains open and includes the lectures and hands-on data analysis session; and/orJoining the waitlist for the full two-day workshop. If a spot becomes available, waitlisted participants will be contacted in the order they joined the waitlist. Because cancellations are common, there is a good chance of receiving a spot, so we encourage you to add your name to the waitlist if you're interested in attending the full workshop.View Workshop Agenda Goeddel Family Technology Sandbox Tour (optional, space-limited) Tour the Goeddel Family Technology Sandbox before the workshop! A limited number of spaces will be available for workshop participants to tour the Technology Sandbox in the afternoon on Tuesday, September 8 (time TBA). UPDATE: There is another opportunity to visit the Technology Sandbox! The UC San Diego Technology Summit 2026 on August 28th between 10:30am and 2:30pm will feature stops at the Technology Sandbox. Official event details: https://calendar.ucsd.edu/event/ptm-proteomics-mass-spectrometry-wo Official event details: https://calendar.ucsd.edu/event/ptm-proteomics-mass-spectrometry-workshop